Live Literature Radar Demo

((("dN/dS" OR "codon model" OR HyPhy OR FEL OR MEME OR FUBAR OR BUSTED OR "branch-site") AND (selection OR evolution OR adaptive OR constraint)) OR (("episodic selection" OR "positive selection" OR "diversifying selection") AND (virus OR pathogen))) AND ("computational evolutionary biology" OR "molecular evolution" OR phylogenomics OR phylodynamics OR HyPhy OR "codon model") NOT (case report OR randomized OR psychology)

((("cancer evolution" OR "tumor evolution" OR "somatic evolution" OR "clonal evolution") AND (genomics OR sequencing OR phylogen* OR "single-cell")) OR ((cancer OR tumor OR lymphoma OR leukemia) AND ("positive selection" OR "clonal selection" OR "driver mutation" OR "dN/dS" OR "selection inference")) OR (("mutational signature" OR "mutational signatures") AND (cancer OR tumor) AND (evolution OR selection OR phylogeny))) AND ("computational evolutionary biology" OR "molecular evolution" OR phylogenomics OR phylodynamics OR HyPhy OR "codon model") NOT (case report OR randomized OR psychology)

(((recombination OR "mosaic genome" OR breakpoint OR "gene conversion") AND (virus OR virome OR pathogen)) OR ((RDP OR GARD OR "recombination detection") AND (sequence OR alignment))) AND ("computational evolutionary biology" OR "molecular evolution" OR phylogenomics OR phylodynamics OR HyPhy OR "codon model") NOT (case report OR randomized OR psychology)

(((phylodynamic* OR "time-resolved phylogeny" OR BEAST OR "birth-death" OR coalescent) AND (virus OR pathogen)) OR (("genomic epidemiology" OR "phylodynamic inference") AND (outbreak OR transmission))) AND ("computational evolutionary biology" OR "molecular evolution" OR phylogenomics OR phylodynamics OR HyPhy OR "codon model") NOT (case report OR randomized OR psychology)

(((virome OR "viral metagenomics" OR viromics) AND ("built environment" OR urban OR subway OR transit OR surface)) OR (("urban microbiome" OR MetaSUB) AND (virus OR virome OR phage))) AND ("computational evolutionary biology" OR "molecular evolution" OR phylogenomics OR phylodynamics OR HyPhy OR "codon model") NOT (case report OR randomized OR psychology)

((("wastewater surveillance" OR WBE OR sewage) AND (virus OR virome OR pathogen OR SARS-CoV-2)) OR ((wastewater OR sewage) AND ("viral metagenomics" OR viromics) AND (variant OR lineage OR evolution))) AND ("computational evolutionary biology" OR "molecular evolution" OR phylogenomics OR phylodynamics OR HyPhy OR "codon model") NOT (case report OR randomized OR psychology)

((("pandemic preparedness" OR biosurveillance OR "pathogen surveillance") AND (genomics OR sequencing)) OR (("early warning" OR "sentinel surveillance") AND (metagenomics OR sequencing))) AND ("computational evolutionary biology" OR "molecular evolution" OR phylogenomics OR phylodynamics OR HyPhy OR "codon model") NOT (case report OR randomized OR psychology)

(((atlas OR database OR compendium OR "reference catalog" OR resource) AND (virome OR microbiome OR pathogen)) OR (("large-scale" OR global) AND (virome OR microbiome) AND (metadata OR harmonization))) AND ("computational evolutionary biology" OR "molecular evolution" OR phylogenomics OR phylodynamics OR HyPhy OR "codon model") NOT (case report OR randomized OR psychology)

((metagenomics AND (benchmark* OR pipeline OR "best practices" OR reproducible OR workflow)) OR ((Kraken2 OR MetaPhlAn OR Bracken OR Centrifuge OR Kaiju) AND (benchmark* OR evaluation))) AND (benchmark* OR workflow OR pipeline OR Snakemake OR Nextflow OR WDL) NOT (case report OR randomized OR psychology)

((("machine learning" OR "deep learning" OR transformer) AND (virus OR pathogen OR evolution OR phylogeny)) OR (("protein language model" OR ESM) AND (mutation OR evolution OR fitness))) AND ("machine learning" OR "deep learning" OR transformer OR "foundation model" OR "protein language model" OR ESM) NOT (case report OR randomized OR psychology)